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SRX3578015: Mapped reads for uncultivated Candidatus Dependentiae bacterium UBA12409 genome recovered from SRX764832
1 ILLUMINA (Illumina HiSeq 2000) run: 93,622 spots, 25.4M bases, 11.6Mb downloads

Design: Reads from SRX764832 were mapped with BWA-MEM v0.7.12-r1039 to a metagenome assembly produced with CLC v4.4.1. The resulting mapping file was then pruned to the contigs comprising the UBA12409 genome.
Submitted by: University of Queensland
Study: Collection of 3,087 bacterial metagenome-assembled genomes recovered from metagenomes available from the Sequence Read Archive.
PRJNA417962 • SRP130174 • All experiments • All runs
show Abstracthide Abstract
Collection of 3,087 bacterial metagenome-assembled genomes (MAGs) recovered from metagenomes available from the Sequence Read Archive. These MAGs comprise part of the data set used to define a standardised bacterial taxonomy based on a concatenated protein phylogeny that conservatively removes polyphyletic groups and normalises ranks based on relative evolutionary divergence.
Sample: Uncultivated Candidatus Dependentiae bacterium UBA12409 genome recovered from SRX764832
SAMN08019878 • SRS2847743 • All experiments • All runs
Organism: Candidatus Dependentiae bacterium
Library:
Name: UBA12409_library
Instrument: Illumina HiSeq 2000
Strategy: WGS
Source: METAGENOMIC
Selection: RANDOM
Layout: PAIRED
Runs: 1 run, 93,622 spots, 25.4M bases, 11.6Mb
Run# of Spots# of BasesSizePublished
SRR648827093,62225.4M11.6Mb2018-02-23

ID:
4963517

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